The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

Abstract

The iPlant Collaborative provides life science research communities access to comprehensive, scalable, and cohesive computational infrastructure for data management; identity management; collaboration tools; and cloud, high-performance, high-throughput computing.iPlant provides training, learning material, and best practice resources to help all researchers make the best use of their data, expand their computational skill set, and effectively manage their data and computation when working as distributed teams.iPlant's platform permits researchers to easily deposit and share their data and deploy new computational tools and analysis workflows, allowing the broader community to easily use and reuse those data and computational analyses.Over the last decade, the discipline of life sciences has benefited tremendously from new, massively parallel, and highly quantitative technologies.These technologies have facilitated rapid data acquisition at an increasingly higher resolution and throughput across all forms of modalities, from super-resolution microscopy to DNA sequencing technologies.Transformational advances in information technology have complemented this phenomenal growth in data acquisition, including cloud and high performance computing, large-scale data management systems, and high-bandwidth networks.However, managing the life cycle of these datasets from acquisition and analysis to publication and archiving often necessitates interdisciplinary collaborations with geographically distributed teams of experts.A common requirement for these interdisciplinary teams is access to integrated computational platforms that are flexible, scalable, and agile.These platforms must provide access to appropriate hardware and software that support diverse data types, computational scalability needs, and the usage patterns of diverse research communities.This includes access to shared data storage that can reliably transfer large sets of data, ability to annotate and search these data with descriptive metadata, connections to appropriate computational hardware (e.g., high-memory computers, virtual machines) for analysis, and identity management systems to securely share data with collaborators.

Abstract of "The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences" by Nirav C. Merchant, Eric H. Lyons, Stephen A. Goff et al., https://doi.org/10.1371/journal.pbio.1002342, used under its Creative Commons Attribution license (CC-BY); markup removed, otherwise unmodified.